What's New about PAPIA System

Last Updated Monday, February 18, 2002

Announcement

PAPIA system maintenance from 10:00 to 18:00 J.S.T. February 20, 2002.
Sorry for inconvenience.

August 16, 2001

• PDB-REPRDB Version 2001_08_10 came out.

July 10, 2001

• PDB-REPRDB Version 2001_05_16 ( based on PDB Rel.#2001_05_16 ) came out. ( Protein Structure Similarity Search, Protein Sequence Homology Search, Protein Sequence Multiple Alignment )

July 3, 2001

• PDB-REPRDB Version 2001_05_16 came out.

March 29, 2001

• PDB-REPRDB Version 2001_01_07 ( based on PDB Rel.#2001_01_07 ) came out. ( Protein Structure Similarity Search, Protein Sequence Homology Search, Protein Sequence Multiple Alignment )

March 13, 2001

• PDB-REPRDB Version 2001_01_07 ( based on PDB Rel.#2001_01_07 ) came out.

October 25, 2000

• PDB-REPRDB Version 2000_09_24 ( based on PDB Rel.#2000_09_24 ) came out.

September 26, 2000

• PDB-REPRDB Version 2000_08_06 ( based on PDB Rel.#2000_08_06 ) came out.

June 29, 2000

• PDB-REPRDB Version 2000_06_11 ( based on PDB Rel.#2000_06_11 ) came out.

September 20, 1999

• タンパク質構造検索の構造比較用ビューワに以下の機能が追加されました。 The structure viewer in Protein Structure Similarity Search become to have some new function.
  1. Residue Labels
  2. Residue Numbering
  3. Ball and Stick Mappings
  4. Color Mappings
  5. Font Control
  6. C&N Terminals

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  September 16, 1999

  • PDB-REPRDB Dynamic 1.0 based on PDB Rel.#89.

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  June 18, 1999

  • Now you can see the sequence of the identified structures obtained by Protein Structure Similarity Search -Search Protein Structures similar to given 3-D coordinates.

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  Mar 30, 1999

  • PDB-REPRDB Dynamic 1.0 ( based on PDB Rel.#86 ) came out.

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  Feb 5, 1999

  • Now A* Algorithm is available as a searching method for Protein Sequence Multiple Alignment.

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  Jan 8, 1999

  • PDB-REPRDB Version 8.0 ( based on PDB Rel.#85 ) came out.

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  Dec 25, 1998

  • Protein Secondary Structure Prediction now accepts FASTA format.

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  Nov 18, 1998

  • Now five popular score matrices are available for Protein Sequence Homology Search and Protein Sequence Multiple Alignment.

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  Nov 7 - 13, 1998

  • We gave a live demonstration of PAPIA system at SC98 : HIGH PERFORMANCE NETWORKING AND COMPUTING CONFERENCE in Florida, USA. ( Booth R230 )
    Brochure [MS Word]

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  Oct 8, 1998

  • Protein Structure Similarity Search for 3D coordinates now accepts so-called PDB ATOM lines.

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  Aug 21, 1998

  • PDB-REPRDB Version 7.0 ( based on PDB Rel.#84 ) came out.

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  July 14, 1998

  • Protein Sequence Homology Search now accepts FASTA format.

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  July 8, 1998

  • The result of Protein Sequence Homology Search is now shown as pairwise alignment.
  • Now you can send the results from Protein Sequence Homology Search directly to the input form of Protein Sequence Multiple Alignment via GUI.

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  June 26, 1998

  • Regarding the result of Protein Structure Similarity Search - for a protein fragment in PDB-REPRDB, now that structure viewer shows the query structure fragment together with the fragments found.
  • Two remarkable changes were made to Protein Sequence Homology Search.
    1. Both the maximum and minimum threshold is configurable.
    2. The two different score matrix BLOSUM80 and PAM250 are available.

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  June 25, 1998

  • The data set for Protein Structure Similarity Search and Protein Sequence Homology Search was enlarged to PDB-REPRDB( ID = 95%, MAXD = 10A ).

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  June 1, 1998

  • Japanese version of PDB-REPRDB came out.

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  May 25, 1998

  • We made a press release. PAPIA system was opened to public.

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  May 22, 1998

  • Japanese version of PAPIA system came out.

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  May 7, 1998

  • PDB-REPRDB Version 6.0 ( based on PDB Rel.#83 ) came out.

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  April 20, 1998

  • PAPIA sytem WWW service tentatively started.
  • 'SWISS-PROT' is available for Protein Sequence Homology Search.
  • Descriptions of protein entries were attached to the Protein Sequence Homology Search's results.

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  April 17, 1998

  • Protein Secondary Structure Prediction service came out.

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  March 27, 1998

  • PDB-REPRDB Version 5.0 ( based on PDB Rel.#82 ) came out.

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  March 13, 1998

  • Protein Structure Similarity Search - for a protein fragment in PDB-REPRDB service came out.

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  March, 1998

  • 'Service status' page came out.

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  February, 1998

  • Protein Structure Similarity Search - for amino acid sequence exact match service came out.

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  January, 1998

  • Java pages were replaced with HTML pages.

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  November 15 - 21, 1997

  • PAPIA system was demonstrated on RWC PC Cluster II in SC'97 : High Performance Networkingand Computing conference exhibition (US San Jose).

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  PAPIA system, papia@m.aist.go.jp Copyright © 1997-2000, Parallel Application TRC Lab. , RWCP , Japan Copyright © 2001, Computational Biology Research Center , AIST , Japan