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Scarna:
Stem Candidate Aligner for RNA

released on 4th October, 2005

ScarnaScarna HP http://www.scarna.org/

Stem Candidate Aligner for RNA (Scarna) is a tool for sequence analyses of RNAs.
It aligns two RNA sequences and calculate the similarities of them, based on the estimated common secondary structures.
Scarna is a fast, convenient tool for clustering RNA sequences and for similarity search in long sequences.

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