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  • Ę£Integrated System
  • Ę£Genome Analysis
  • Ę£Cellular System Analysis

  • Ę£Protein Structure/Function Prediction

Workflow
TOGO
Life Science DB Integration Web
http://togo.cbrc.jp/en_index.html
ALN
ALN
Pairwise alignment of biological sequences supporting spliced alignment procedures
http://www.cbrc.jp/ALN/
CentroidFold
CentroidFold
RNA secondary structure prediction software
http://www.ncrna.org/centroidfold/
GUPPY
GUPPY
A program to visualize sequence annotation data of the genetic sequence data with graphical layout
http://www.cbrc.jp/GUPPY/
LAST
LAST
Genome-Scale Sequence Comparison
http://last.cbrc.jp/
MAFFT
MAFFT
Multiple sequence alignment program
http://mafft.cbrc.jp/alignment/software/
Murlet
MURLET
a multiple alignment tool for structural RNA sequences.
http://murlet.ncrna.org/
paraclu
paraclu
Find clusters in data attached to sequences.
http://www.cbrc.jp/paraclu/
Rfold
Rfold
Rfold computes local base pairing probabilities for long DNA sequences
http://www.ncrna.org/
software/rfold/
seg-suite
seg-suite
Tools for manipulating segments and alignments.
http://www.cbrc.jp/seg-suite/
Spaln
Spaln
Mapping and spliced alignment of transcript (EST, cDNA, or amino acid) sequences onto a genomic sequence
http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln/
tantan
TANTAN
Find cryptic repeats in DNA, RNA, and protein sequences.
http://www.cbrc.jp/tantan/
CellMontage
CellMontage
A gene expression databases searching system for cells-type analysis
http://cellmontage.cbrc.jp/
SAMURAI
SAMURAI
A program for fast and exhaustive enumeration of gene modules
http://samurai.cbrc.jp/
FORTE
FORTE
An algorithm used to accurately align a target protein profile against a protein profile of known structure
http://www.cbrc.jp/forte/
GRIFFIN
GRIFFIN
A system for predicting GPCR-G-protein coupling selectivity using SVM and HMM
http://griffin.cbrc.jp/
GRIP
GRIP
Interface Prediction for GPCR Oligomerization
http://grip.cbrc.jp/GRIP/
POODLE
POODLE
Prediction of order and disorder by machine learning
http://mbs.cbrc.jp/poodle/
TMBETA-NET
TMBETA-NET
A program to predict beta strand type membrane proteins from amino acid sequence
http://psfs.cbrc.jp/tmbeta-net/
WoLF PSORT
WoLF PSORT
Software to predict sub-cellular localization sites of proteins based on their amino acid sequences
http://wolfpsort.org
ScreenCap3
ScreenCap3
Screening of caspase-3 substrates and cleavage site prediction
http://scap.cbrc.jp/ScreenCap3/
MitoFates
MitoFates
A prediction tool for identifying putative mitochondrial presequences and cleavage sites
http://mitf.cbrc.jp/MitoFates/

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